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MPK’s research notebook- Reaction norms for larval viability in Drosophila pseudoobscura November 7, 2011
- Results November 7, 2011
- LRG lab meeting (November 7, 2011) November 7, 2011
- Genotype-by-environment interaction figure November 7, 2011
- Model November 7, 2011
- Woltereck November 7, 2011
- Introduction November 7, 2011
- Questions needing answers November 7, 2011
- Daphnia November 7, 2011
- About November 7, 2011
- My CiteULike
- Density Dependence Slows Invader Spread in Fragmented Landscapes Jonathan Levine
- Names are key to the big new biology
- Community ecology: stasis, evolution or revolution?
- Assessing rapid evolution in a changing environment
- Adaptation genomics: the next generation
- A Bacterium That Can Grow by Using Arsenic Instead of Phosphorus
- Low-altitude airbursts and the impact threat D Crawford
- Aging in a Long-Lived Clonal Tree Sarah Otto
- Using Environmental Correlations to Identify Loci Underlying Local Adaptation Jonathan Pritchard
- Mathematics Is Biology's Next Microscope, Only Better; Biology Is Mathematics' Next Physics, Only Better Joel Cohen
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Category Archives: Sweave
To Sweave, or not to Sweave, that is the question
I am about to start writing up the manuscript of my recent biomath seminar (Act 3: Pineda-Krch. 2011. Cycles at the edge of existence: Emergence of quasi-cycles in strongly destabilized ecosystems.). While the slides for the talk were put together using … Continue reading
Posted in manuscript, R, Sweave, writing
9 Comments
The Joy of R: A Feline Guide
Just because it’s caturday Images by Mario Pineda-Krch (CC BY-NC-SA 3.0) This is from the “Mario’s Entangled Bank” blog ( http://pineda-krch.com ) of Mario Pineda-Krch, a theoretical biologist at the University of Alberta.
Cycles in finite populations: A reproducible seminar in three acts
For this years Halloween I presented the mathematical biology seminar at the Centre for Mathematical Biology. Here is the title and the abstract… Cycles in finite populations: a reproducible seminar in three acts Many natural populations exhibit cyclic fluctuations. Explaining the underlying … Continue reading
Posted in LaTeX, Open Notebook science, open science, predator-prey model, presentation, programing, R, Sweave
11 Comments
Open Access(ish) contribution: Cycles in finite populations: a reproducible seminar in three acts
It’s Open Access week and this is what the hoopla is all about “Open Access” to information – the free, immediate, online access to the results of scholarly research, and the right to use and re-use those results as you need … Continue reading
The Joy of Sweave – A Beginner’s Guide to Reproducible Research with Sweave
Just wrapped up the slides for the first version of the The Joy of Sweave – A Beginner’s Guide to Reproducible Research with Sweave which I presented today in our lab. I am making the slides available under a Creative Commons … Continue reading
Posted in presentation, R, Sweave
4 Comments
Top 10 things that suck about Sweave
People rave about Sweave and the literate programing paradigm and I am guilty as charged. I speak Sweave, I think Sweave, I dream Sweave. As a matter of fact my default mode of operation is Sweave and anything else is an … Continue reading
Posted in humour, R, Sweave
24 Comments
