-
Recent comments
MPK’s research notebook- Reaction norms for larval viability in Drosophila pseudoobscura November 7, 2011
- Results November 7, 2011
- LRG lab meeting (November 7, 2011) November 7, 2011
- Genotype-by-environment interaction figure November 7, 2011
- Model November 7, 2011
- Woltereck November 7, 2011
- Introduction November 7, 2011
- Questions needing answers November 7, 2011
- Daphnia November 7, 2011
- About November 7, 2011
- My CiteULike
- Density Dependence Slows Invader Spread in Fragmented Landscapes Jonathan Levine
- Names are key to the big new biology
- Community ecology: stasis, evolution or revolution?
- Assessing rapid evolution in a changing environment
- Adaptation genomics: the next generation
- A Bacterium That Can Grow by Using Arsenic Instead of Phosphorus
- Low-altitude airbursts and the impact threat D Crawford
- Aging in a Long-Lived Clonal Tree Sarah Otto
- Using Environmental Correlations to Identify Loci Underlying Local Adaptation Jonathan Pritchard
- Mathematics Is Biology's Next Microscope, Only Better; Biology Is Mathematics' Next Physics, Only Better Joel Cohen
-
- Unknown Feed
- An error has occurred; the feed is probably down. Try again later.
Category Archives: Open Notebook science
F1000 review: Open science is a research accelerator
As promised previously, today the following post-publication evaluation of Open Science is a research accelerator by Michael Woelfle, Piero Olliaro and Matthew H. Todd appeared in Faculty of 1000 Biology: Pineda-Krch, M. Faculty of 1000 Biology, 14 November 2011 http://f1000.com/13352995 It is commonly taken for granted that difficult … Continue reading
Cycles in finite populations: A reproducible seminar in three acts
For this years Halloween I presented the mathematical biology seminar at the Centre for Mathematical Biology. Here is the title and the abstract… Cycles in finite populations: a reproducible seminar in three acts Many natural populations exhibit cyclic fluctuations. Explaining the underlying … Continue reading
Posted in LaTeX, Open Notebook science, open science, predator-prey model, presentation, programing, R, Sweave
11 Comments
Open Access(ish) contribution: Cycles in finite populations: a reproducible seminar in three acts
It’s Open Access week and this is what the hoopla is all about “Open Access” to information – the free, immediate, online access to the results of scholarly research, and the right to use and re-use those results as you need … Continue reading
Turbo charged Open Science: this sort of thing is my bag, baby
A remarkable commentary appeared today in Nature Chemistry entitled Open Science is a research accelerator. In this commentary Michael Woelfle, Piero Olliaro and Matthew H. Todd describe a case study of an Open Science research project they conducted with the aim devising an alternative … Continue reading
Choosing the tools of Open Notebook Science – redux
After tinkering with and pondering about my Open Notebook Science setup it looks like this time I will have to eat my own words. Specifically my statement “a wiki does not make a good platform for my Open Notebook Science … Continue reading
Posted in Open Notebook science
1 Comment
Choosing the tools of Open Notebook Science
I will always remember my post Starting an Open Notebook Science project as the day that I almost started with ONS. But, complications arose, ensued, were overcome and here I am ready again to embark on my own ONS experiment. … Continue reading
Posted in Open Notebook science
4 Comments
One step closer to Open Notebook Science
One step closer to Open Notebook Science right here. Now just hacking the tools. This is from the “Mario’s Entangled Bank” blog (http://pineda-krch.com) of Mario Pineda-Krch, a theoretical biologist at the University of Alberta.
Posted in Open Notebook science
Leave a comment
Starting an Open Notebook Science project
Traditionally the day-to-day activities of academic research has been a closed endeavor where research note books are usually only available to people in the lab. Open Notebook Science (ONS), in contrast, represents a revolutionary concept going against the grain of … Continue reading
Posted in LaTeX, Open Notebook science, open science, Science Foo, Subversion
5 Comments
Distributed Open Notebook Science
One of the interesting concept that emerged during SciFoo, i.e. one that I actually was able to comprehend (sorry, Garrett, your 2 dimensional projection of the 7 dimensional particle space didn’t not manage to penetrate my skull, but the pictures … Continue reading
Posted in Git, Linus Torvalds, Open Notebook science, Science Foo
2 Comments
